Together for Biodiversity
Livestock Genomics and Conservation - AGRIGENOMICS
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PUBLICATIONS |
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Group Description
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Articles in SCI journals 2017
Álvarez I, Pérez-Pardal L, Traoré A, Koudandé DO, Fernández I, Soudré A, Diarra S, Sanou M, Boussini H, Goyache F (2017) Differences in genetic structure assessed using Y-chromosome and mitochondrial DNA markers do not shape the contributions to diversity in African sires. Journal of Animal Breeding and Genetics.
Cortes O, Dunner S, Gama LT, Martinez AM, Delgado JV, Ginja C, Jimenez LM, Jordana J, Luis C, Oom MM, Sponenberg DP, Zaragoza P, Vega-Pla JL (2017) The legacy of Columbus in American horse populations assessed by microsatellite markers. Journal of Animal Breeding, 134(4): 340-350.
Ginja C, Gama LT, Martínez A, Sevane N, Martin-Burriel I, Lanari MR, Revidatti MA, Aranguren-Méndez JA, Bedotti DO, Ribeiro MN, Sponenberg P, Aguirre EL, Alvarez-Franco LA, Menezes MPC, Chacón E, Galarza A, Gómez-Urviola N, Martínez-López OR, Pimenta-Filho EC, da Rocha LL, Stemmer A, Landi V, Delgado-Bermejo JV (2017) Genetic diversity and patterns of population structure in Creole goats from the Americas. Animal Genetics, 48(3): 315-329.
Luzuriaga-Neira A, Villacis-Rivas G, Cueva-Castillo F, Escudero-Sanchez G, Ulloa-Nunez A, Rubilar-Quezada M, Monteiro R, Miller MR, Beja-Pereira A (2017) On the origins and genetic diversity of South American chickens: one step closer. Animal Genetics, 48(3): 353-357.
Miranda C, Vieira MJ, Silva E, Carvalheira J, Parrish CR, Thompson G (2017) Genetic Analysis of Feline Panleukopenia Virus Full-length VP2 Gene in Domestic Cats Between 2006-2008 and 2012-2014, Portugal. Transboundary and Emerging Diseases, 64(4): 1178-1183.
O'Brien MP, Beja-Pereira A, Anderson N, Ceballos RM, Edwards WH, Harris B, Wallen RL, Costa V, Luikart G (2017) Brucellosis Transmission between Wildlife and Livestock in the Greater Yellowstone Ecosystem: Inferences from DNA Genotyping. Journal of Wildlife Diseases , 53(2): 339-343.
Pérez-Pardal L, Chen S, Costa V, Liu X, Carvalheira J, Beja-Pereira A (2017) Genomic differentiation between swamp and river buffalo using a cattle high-density single nucleotide polymorphisms panel. Animal.
Pelayo R, Penedo MCT, Valera M, Molina A, Millon L, Ginja C, Royo LJ (2017) Identification of a new Y chromosome haplogroup in Spanish native cattle. Animal Genetics, 48(4): 450-454.
Perez-Gonzalez J, Costa V, Santos P, Carranza J, Zsolnai A, Fernandez-Llario P, Monteiro NM, Anton I, Beja-Pereira A (2017) Heterozygosity decrease in wild boar mating system - a case of outbreeding avoidance? Journal of Zoology, 302(1): 40-48.
2016
Al-Hamidhi S, Weir W, Kinnaird J, Tageledin M, Beja-Pereira A, Morrison I, Thompson J, Tait A, Shiels B, Babiker HA (2016) Theileria lestoquardi displays reduced genetic diversity relative to sympatric Theileria annulata in Oman. Infection, Genetics and Evolution, 43: 297-306.
Alvarez I, Perez-Pardal L, Traore A, Fernandez I, Goyache F (2016) African Cattle do not Carry Unique Mutations on the Exon 9 of the ARHGAP15 Gene. Animal Biotechnology, 27(1): 9-12.
Alvarez I, Perez-Pardal L, Traore A, Fernandez I, Goyache F (2016) Lack of haplotype structuring for two candidate genes for trypanotolerance in cattle. Journal of Animal Breeding and Genetics, 133(2): 105-114.
Alvarez I, Perez-Pardal L, Traore A, Fernandez I, Goyache F (2016) Lack of specific alleles for the bovine chemokine (C-X-C) receptor type 4 (CXCR4) gene in West African cattle questions its role as a candidate for trypanotolerance. Infection, Genetics and Evolution, 42:30-33.
Cortés O, Martinez AM, Cañon J, Sevane N, Gama LT, Ginja C, Landi V, Zaragoza P, Carolino N, Vicente A, Sponenberg P, Delgado JV (2016) Conservation priorities of Iberoamerican pig breeds and their ancestors based on microsatellite information. Heredity
de Sousa-Pereira P, Abrantes J, Baldauf HM, Keppler O, Esteves PJ (2016) Evolutionary study of leporid CD4 reveals a hotspot of genetic variability within the D2 domain. Immunogenetics, 68(6-7): 477-482.
Kebede F, Rosenbom S, Khalatbari L, Moehlman PD, Beja-Pereira A, Bekele A (2016) Genetic diversity of the Ethiopian Grevy’s zebra (Equus grevyi) populations that includes a unique population of the Alledeghi Plain. Mitochondrial DNA, 27(1): 397-400.
Maia MRG, Marques S, Cabrita ARJ, Wallace RJ, Thompson G, Fonseca AJM, Oliveira HM (2016) Simple and Versatile Turbidimetric Monitoring of Bacterial Growth in Liquid Cultures Using a Customized 3D Printed Culture Tube Holder and a Miniaturized Spectrophotometer: Application to Facultative and Strictly Anaerobic Bacteria. Frontieres in Microbiology, 7: 1381.
Menendez J, Goyache F, Beja-Pereira A, Fernandez I, Menendez-Arias NA, Godinho R, Alvarez I (2016) Genetic characterisation of the endangered Gochu asturcelta pig breed using microsatellite and mitochondrial markers: Insights for the composition of the Iberian native pig stock. Livestock Science, 187: 162-167.
Upadhyay MR, Chen W, Lenstra JA, Goderie CRJ, MacHugh DE, Park SDE, Magee DA, Matassino D, Ciani F, Megens H-J, van Arendonk JAM, Groenen MAM, European Cattle Genetic Diversity Consortium, RPMA Crooijmans (2016) Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle. Heredity.
2015
Al-Hamidhi S, Tageldin MH, Weir W, Al-Fahdi A, Johnson EH, Bobade P, Alqamashoui B, Beja-Pereira A, Thompson J, Kinnaird J, Shiels B, Tait A, Babiker H (2015) Genetic Diversity and Population Structure of Theileria annulata in Oman. PLOS ONE, 10(10): e0139581.
Bakhiet AMA, Abdel-Muhsin AMA, Elzaki SEG, Al-Hashami Z, Albarwani HS, AlQamashoui BA, Al-Hamidhi S, Idris MA, Elagib AA, Beja-Pereira A, Babiker HA (2015) Plasmodium falciparum population structure in Sudan post artemisinin-based combination therapy. Acta Tropica, 148: 97-104.
Bruford MW, Ginja C, Hoffmann I, et al (2015) Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025. Frontiers in genetics.
Colominas L, Edwards CJ, Beja-Pereira A, Vigne JD, Silva RM, Castanyer P, Tremoleda J, Segui MS, Perez-Ripoll M, Goyache F, Howe CJ, Barker G, Bower MA (2015) Detecting the T1 cattle haplogroup in the Iberian Peninsula from Neolithic to medieval times: new clues to continuous cattle migration through time. Journal of Archaeological Science, 59: 110-117.
Martínez AM, Gama LT, Delgado JV, Cañón J, Amills M, de Sousa CB, Ginja C, Zaragoza P, Manunza A, Landi V, Sevane N, The BioGoat Consortium (2015) The Southwestern fringe of Europe as an important reservoir of caprine biodiversity. Genetics Selection Evolution, 47:86.
Miranda C, Carvalheira J, Parrish CR, Thompson G (2015) Factors affecting the occurrence of canine parvovirus in dogs. Veterinary Microbiology, 180(1-2): 59-64.
Rosenbom S, Costa V, Al-Araimi N, Kefena E, Abdel-Moneim AS, Abdalla MA, Bakhiet A, Beja-Pereira A (2015) Genetic diversity of donkey populations from the putative centers of domestication. Genetic diversity of donkey populations from the putative centers of domestication. Animal Genetics, 46(1): 30-36.
Rosenbom S, Costa V, Chen SY, Khalatbari L, Yusefi GH, Abdukadir A, Yangzom C, Kebede F, Teclai R, Yohannes H, Hagos F, Moehlman PD, Beja-Pereira A (2015) Reassessing the evolutionary history of ass-like equids: Insights from patterns of genetic variation in contemporary extant populations. 85: 88-96.
Silva E, Osorio H, Thompson G (2015) Hepatitis C-like viroses are produced in cells form rabbit and hare DNA. Nature Scientific Reports, 5:14535
2014
Al-Hamidhi S, Mandy MAK, Idris MA, Bin Dajem SM, Al-Sheikh AAH, Al-Qahtani A, Al-Hashami Z, Al-Farsi H, Al-Mekhlafi AM, Saif-Ali R, Beja-Pereira A, Babiker HA (2014) The prospect of malaria elimination in the Arabian Peninsula: A population genetic approach. Infection Genetics and Evolution, 27: 25-31.
Cosart T, Beja-Pereira A, Luikart G (2014) EXONSAMPLER: a computer program for genome-wide and candidate gene exon sampling for targeted next-generation sequencing. Molecular Ecology Resources, 14(6): 1296-1301.
Hand BK, Chen S, Anderson N, Beja-Pereira A, Cross P, Ebinger M, Edwards H, Garrett B, Kardos M, Kauffman M, Landguth EL, Middleton A, Scurlock B, White PJ, Zager P, Schwartz M, Luikart G (2014) Sex- biased gene flow among elk in the Greater Yellowstone Ecosystem. Journal of Fish and Wildlife Management, 5(1):124-132.
Kefenaa E, Dessie T, Tegegne A, Beja-Pereira A, Kurtu MY, Rosenbom S, Han JL (2014) Genetic diversity and matrilineal genetic signature of native Ethiopian donkeys (Equus asinus) inferred from mitochondrial DNA sequence polymorphism. Livestock Science, 167: 73-79.
Perez-Pardal L, Grizelj J, Traore A, Cubric-Curik V, Arsenos G, Dovenski T, Markovic B, Fernandez I, Cuervo M, Alvarez I, Beja-Pereira A, Curik I, Goyache F (2014) Lack of mitochondrial DNA structure in Balkan donkey is consistent with a quick spread of the species after domestication. Animal Genetics, 45, 144–147.
2013
Al-Hamidhi S, Mahdy MAK, Al-Hashami Z, Al-Farsi H, Al-Mekhlafi AM, Idris MA, Beja-Pereira A, Babiker HM (2013) Genetic diversity of Plasmodium falciparum and distribution of drug resistance haplotypes in Yemen. Malaria Journal, 12: 244.
Bhuiyan MSA, Chen S, Faruque S, Bhuiyan AKFH, Beja-Pereira A (2013) Genetic diversity and maternal origin of Bangladeshi chicken. Molecular Biology Reports, 40: 4123-4128.
Chen S, Gomes R, Costa V, Santos P, Charneca R, Zhang Y-P, Liu X-H, Wang S-Q, Bento P, Nunes JL, Buzgo J, Varga G, Anton I, Zsolnai A, Beja-Pereira A (2013) How immunogenetically different are domestic pigs from wild boars: A perspective from single nucleotide polymorphisms of 19 immunity-related candidate genes. Immunogenetics, 65(10): 737-748.
Kimura B, Marshall F, Beja-Pereira A, Mulligan C (2013) Donkey Domestication. African Archaeological Review, 30(1): 83-95.
Mahgoub O, Babiker H, Kadim IT, Al-Kindi M, Hassan S, Al-Marzooqi W, Eltahir Y, Al-Abri MA, Al-Khayat A, Al-Sinani KR, Hilal H, Costa V, Chen S, Beja-Pereira A (2013) Disclosing the origin and diversity of Omani cattle. Animal Genetics, 44: 336–339.
Miao Y-W, Peng M-S, Wu G-S, Ouyang Y-N, Yang Z-Y, Yu N, Liang J-P, Pianchou G, Beja-Pereira A, Mitra B, Palanichamy MJ, Baig M, Chaudhuri TK, Shen Y-Y, Kong Q-P, Murphy R W, Yao Y-G, Zhang Y-P (2013) Chicken domestication: an updated perspective based on mitochondrial genomes. Heredity, 110(3): 277-282.
Click here to see an extended list of publications.
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